Variant report

Variant	rs560634520
Chromosome Location	chr3:101306976-101306977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101306900-101307229	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:101294680..101296540-chr3:101306521..101308762,3	MCF-7	breast:
2	chr3:101306571..101308264-chr3:101393626..101395176,2	MCF-7	breast:
3	chr3:101294135..101296037-chr3:101305299..101307442,2	K562	blood:
4	chr3:101292711..101295635-chr3:101305942..101308105,2	K562	blood:

Variant related genes	Relation type
PCNP	TF binding region
ENSG00000081154	Chromatin interaction
ENSG00000242299	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522745	chr3:101306507-101313940	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528547	chr3:101306507-101313940	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
9	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
10	chr3:101296200-101310000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:101296400-101316400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:101296600-101311600	Weak transcription	Stomach Mucosa	stomach
13	chr3:101296600-101315000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:101296800-101318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:101297400-101314400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:101297600-101315200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:101297800-101312400	Weak transcription	Brain Angular Gyrus	brain
18	chr3:101298600-101316400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:101298800-101312000	Weak transcription	Fetal Heart	heart
20	chr3:101298800-101312800	Weak transcription	Small Intestine	intestine
21	chr3:101299000-101309400	Weak transcription	Ovary	ovary
22	chr3:101300200-101317800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:101301000-101311400	Strong transcription	Fetal Stomach	stomach
24	chr3:101301000-101313400	Strong transcription	HSMM	muscle
25	chr3:101301000-101315400	Strong transcription	Dnd41	blood
26	chr3:101301200-101307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:101301200-101313000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:101301200-101315400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:101301400-101313600	Strong transcription	Primary B cells from cord blood	blood
30	chr3:101301400-101316400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr3:101301600-101307200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr3:101301600-101307200	Strong transcription	Fetal Intestine Large	intestine
33	chr3:101301600-101309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:101301600-101314600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:101301600-101315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:101301600-101317000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:101301800-101307200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:101301800-101307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr3:101301800-101311400	Strong transcription	Fetal Muscle Leg	muscle
40	chr3:101301800-101312200	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr3:101301800-101313400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:101301800-101316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:101302000-101310000	Weak transcription	NHDF-Ad	bronchial
44	chr3:101302200-101314400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr3:101302600-101319600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:101302800-101307200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr3:101302800-101313600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:101302800-101315000	Strong transcription	Fetal Thymus	thymus
49	chr3:101303000-101307200	Strong transcription	Fetal Brain Female	brain
50	chr3:101303200-101314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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