Variant report

Variant	rs560638830
Chromosome Location	chr3:113008474-113008475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113006518..113009252-chr3:113022615..113024220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206530	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv521829	chr3:113007525-113010950	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112984800-113016400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:112990400-113036000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:112993800-113036000	Weak transcription	Right Ventricle	heart
4	chr3:112995200-113016000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:112995200-113022400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:112995400-113024000	Weak transcription	Aorta	Aorta
7	chr3:112995400-113035800	Weak transcription	Lung	lung
8	chr3:112995800-113013000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:112995800-113035800	Weak transcription	Thymus	Thymus
10	chr3:112996000-113025400	Weak transcription	Small Intestine	intestine
11	chr3:112996200-113034400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:112996400-113046400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:112997200-113036200	Weak transcription	Spleen	Spleen
14	chr3:112998600-113036000	Weak transcription	Gastric	stomach
15	chr3:113000200-113016400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:113000800-113014400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:113001200-113025400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:113001200-113044600	Weak transcription	Fetal Kidney	kidney
19	chr3:113003200-113015400	Weak transcription	Brain Germinal Matrix	brain
20	chr3:113003400-113022600	Weak transcription	Colonic Mucosa	Colon
21	chr3:113003800-113016200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:113003800-113023000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:113004200-113023800	Weak transcription	Brain Substantia Nigra	brain
24	chr3:113004600-113016200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:113005600-113029800	Weak transcription	Fetal Intestine Large	intestine
26	chr3:113006200-113009000	Weak transcription	Fetal Lung	lung
27	chr3:113006200-113009400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:113006200-113010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:113006200-113010400	Weak transcription	Ovary	ovary
30	chr3:113006200-113035400	Weak transcription	Esophagus	oesophagus
31	chr3:113006200-113036000	Weak transcription	Pancreas	Pancrea
32	chr3:113006400-113009000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:113006400-113009600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:113006600-113024000	Weak transcription	HSMMtube	muscle
35	chr3:113006800-113010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:113006800-113015800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:113006800-113022600	Weak transcription	Hela-S3	cervix
38	chr3:113006800-113031800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:113007000-113008600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:113007000-113010200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:113007000-113010600	Weak transcription	NHDF-Ad	bronchial
42	chr3:113007000-113012400	Weak transcription	A549	lung
43	chr3:113007000-113016400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:113007000-113022000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:113007000-113022600	Weak transcription	Liver	Liver
46	chr3:113007000-113022800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:113007000-113023800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:113007000-113028000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:113007000-113034400	Weak transcription	HSMM	muscle
50	chr3:113007200-113008600	Genic enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links