Variant report

Variant	rs560650534
Chromosome Location	chr2:40492732-40492733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1851152	chr2:40393223-40512023	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1008190	chr2:40429442-40506772	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv524586	chr2:40447587-40497501	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3416220	chr2:40492514-40496610	Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40478800-40496600	Weak transcription	Right Ventricle	heart
2	chr2:40478800-40499600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:40485800-40492800	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:40487600-40499600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:40487600-40503200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:40487600-40505600	Weak transcription	HSMM	muscle
7	chr2:40487800-40499800	Weak transcription	Osteobl	bone
8	chr2:40487800-40502600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:40488200-40506200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:40488400-40498200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:40488600-40502800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:40490200-40493600	Weak transcription	Fetal Heart	heart
13	chr2:40490400-40497400	Weak transcription	Aorta	Aorta
14	chr2:40490400-40497800	Weak transcription	Left Ventricle	heart
15	chr2:40492000-40501600	Enhancers	Fetal Intestine Small	intestine
16	chr2:40492000-40501800	Enhancers	Fetal Intestine Large	intestine
17	chr2:40492200-40493800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:40492400-40493000	Weak transcription	Dnd41	blood
19	chr2:40492600-40493000	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links