Variant report

Variant	rs560653628
Chromosome Location	chr7:69195815-69195816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3394718	chr7:69194534-69238432	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69185000-69203000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69192000-69196600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69193400-69197000	Weak transcription	Ovary	ovary
4	chr7:69193400-69197000	Weak transcription	Psoas Muscle	Psoas
5	chr7:69193400-69202400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:69193400-69204200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:69193600-69196400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:69193600-69196600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:69193600-69196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:69193600-69196600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:69193600-69196600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:69193600-69196800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:69193600-69197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:69193800-69196600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:69193800-69203800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:69194000-69196400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:69194000-69196600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:69194000-69197000	Weak transcription	NH-A	brain
19	chr7:69194400-69196600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:69195600-69197000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:69195600-69198200	Enhancers	Stomach Mucosa	stomach
22	chr7:69195800-69196000	Enhancers	Fetal Lung	lung
23	chr7:69195800-69198000	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links