Variant report

Variant	rs560655387
Chromosome Location	chr2:116042840-116042841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3382948	chr2:116042382-116045480	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116040600-116043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:116042200-116043200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:116042200-116043400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:116042200-116043400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:116042200-116043600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:116042400-116043400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:116042400-116043600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:116042600-116043200	Enhancers	Brain Cingulate Gyrus	brain
9	chr2:116042600-116043400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:116042600-116043600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:116042800-116043000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:116042800-116043200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:116042800-116043400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:116042800-116043400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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