Variant report

Variant	rs56066934
Chromosome Location	chr5:90638258-90638259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10462494	0.87[EUR][1000 genomes]
rs10462495	0.87[EUR][1000 genomes]
rs56259969	0.88[AFR][1000 genomes]
rs59578984	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6865269	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6880312	0.84[EUR][1000 genomes]
rs6892424	0.93[EUR][1000 genomes]
rs7727557	0.87[EUR][1000 genomes]
rs7732832	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90635000-90639000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:90635600-90639800	Weak transcription	A549	lung
3	chr5:90636200-90639200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:90636800-90638400	Enhancers	Adipose Nuclei	Adipose
5	chr5:90637200-90638400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:90637800-90639600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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