Variant report

Variant	rs56067251
Chromosome Location	chr5:79797233-79797234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs187262	1.00[ASN][1000 genomes]
rs2547498	1.00[ASN][1000 genomes]
rs259050	1.00[ASN][1000 genomes]
rs28525400	1.00[ASN][1000 genomes]
rs386403	1.00[ASN][1000 genomes]
rs62366867	1.00[ASN][1000 genomes]
rs62366868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1028027	chr5:79694699-79841752	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv968213	chr5:79794173-79797743	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79784600-79797400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:79784800-79806600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:79784800-79819400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:79785000-79822800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:79785200-79817600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:79790800-79811200	Weak transcription	Placenta	Placenta
7	chr5:79791400-79798000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:79794800-79798000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:79794800-79812800	Weak transcription	Esophagus	oesophagus
10	chr5:79795000-79797600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:79795600-79806000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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