Variant report

Variant	rs56067409
Chromosome Location	chr6:33401049-33401050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33395899..33401993-chr6:33420102..33423796,11	MCF-7	breast:
2	chr6:33358270..33361160-chr6:33397889..33401606,4	K562	blood:
3	chr6:33398677..33403495-chr6:33419995..33423723,6	K562	blood:
4	chr6:33399707..33401893-chr6:33408144..33410005,2	MCF-7	breast:
5	chr6:33237732..33247113-chr6:33390735..33401356,31	K562	blood:
6	chr6:33357884..33361160-chr6:33397889..33401606,5	K562	blood:

Variant related genes	Relation type
ENSG00000223501	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000213588	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000235863	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62405888	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv885769	chr6:33377522-33412197	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1019212	chr6:33398031-33413930	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33396000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:33396400-33401200	Enhancers	Spleen	Spleen
3	chr6:33396400-33401600	Enhancers	Fetal Heart	heart
4	chr6:33396400-33403000	Weak transcription	Ovary	ovary
5	chr6:33396400-33405200	Weak transcription	Psoas Muscle	Psoas
6	chr6:33396600-33416000	Weak transcription	Pancreas	Pancrea
7	chr6:33396800-33402000	Enhancers	Fetal Lung	lung
8	chr6:33396800-33403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:33396800-33403000	Weak transcription	Aorta	Aorta
10	chr6:33398000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:33398200-33401400	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:33398200-33401400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:33398400-33401800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:33398400-33402000	Enhancers	Right Ventricle	heart
15	chr6:33398600-33401200	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:33398600-33402200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:33398600-33403000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:33398600-33403000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:33398800-33401400	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr6:33398800-33403000	Weak transcription	Osteobl	bone
21	chr6:33399200-33401200	Weak transcription	HSMM	muscle
22	chr6:33399200-33401800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:33399200-33403200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:33399200-33403400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:33399200-33403600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:33399400-33401400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
27	chr6:33399400-33401400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:33399400-33401400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:33399400-33401400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:33399400-33402200	Enhancers	Colon Smooth Muscle	Colon
31	chr6:33399400-33402200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:33399400-33402200	Enhancers	Rectal Smooth Muscle	rectum
33	chr6:33399400-33402800	Weak transcription	Esophagus	oesophagus
34	chr6:33399400-33403000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:33399400-33403000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:33399400-33403000	Weak transcription	Adipose Nuclei	Adipose
37	chr6:33399400-33403400	Weak transcription	NHEK	skin
38	chr6:33399400-33421200	Weak transcription	HMEC	breast
39	chr6:33399400-33421600	Weak transcription	Stomach Mucosa	stomach
40	chr6:33399600-33401600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:33399600-33402600	Genic enhancers	Fetal Stomach	stomach
42	chr6:33399600-33403000	Weak transcription	Brain Substantia Nigra	brain
43	chr6:33399600-33403000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:33399600-33403200	Weak transcription	Liver	Liver
45	chr6:33399600-33403600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:33399600-33409200	Weak transcription	Small Intestine	intestine
47	chr6:33399600-33421400	Weak transcription	HUVEC	blood vessel
48	chr6:33399800-33401800	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr6:33399800-33403000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:33399800-33421400	Weak transcription	A549	lung

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