Variant report

Variant	rs560704933
Chromosome Location	chr5:35851745-35851746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:35851401-35851767	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr5:35851392-35851747	MCF10A-Er-Src	breast:	n/a	chr5:35851573-35851584
3	GATA3	chr5:35851446-35851811	T-47D	breast:	n/a	n/a
4	STAT3	chr5:35851391-35851788	MCF10A-Er-Src	breast:	n/a	chr5:35851573-35851584
5	STAT3	chr5:35851352-35851793	MCF10A-Er-Src	breast:	n/a	chr5:35851573-35851584
6	FOS	chr5:35851393-35851802	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr5:35851399-35851752	MCF10A-Er-Src	breast:	n/a	chr5:35851573-35851584

Variant related genes	Relation type
IL7R	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881055	chr5:35850693-35858721	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881685	chr5:35850693-35859863	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881358	chr5:35850693-35861068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35848400-35852200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr5:35848600-35852000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35848800-35852400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35849200-35852000	Enhancers	Primary T cells from cord blood	blood
5	chr5:35849600-35852200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:35849600-35856200	Enhancers	Dnd41	blood
7	chr5:35849800-35852200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:35849800-35852600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr5:35849800-35852800	Enhancers	Thymus	Thymus
10	chr5:35849800-35853200	Enhancers	Fetal Thymus	thymus
11	chr5:35850000-35852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:35850000-35852600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr5:35850200-35852000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:35850200-35852000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr5:35851000-35851800	Active TSS	NHLF	lung
16	chr5:35851000-35853000	Flanking Active TSS	Osteobl	bone
17	chr5:35851200-35851800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:35851200-35851800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:35851200-35851800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:35851200-35851800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:35851200-35851800	Active TSS	Ovary	ovary
22	chr5:35851200-35852000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:35851200-35852000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:35851200-35852000	Enhancers	Hela-S3	cervix
25	chr5:35851200-35852200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr5:35851200-35852200	Enhancers	Fetal Muscle Leg	muscle
27	chr5:35851200-35853000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:35851400-35852000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:35851400-35852000	Active TSS	A549	lung
30	chr5:35851400-35852800	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr5:35851600-35851800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr5:35851600-35851800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:35851600-35851800	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr5:35851600-35851800	Flanking Active TSS	Psoas Muscle	Psoas
35	chr5:35851600-35851800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr5:35851600-35851800	Flanking Active TSS	HSMM	muscle
37	chr5:35851600-35851800	Flanking Active TSS	NHDF-Ad	bronchial
38	chr5:35851600-35852200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:35851600-35852400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:35851600-35852400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:35851600-35852400	Enhancers	Adipose Nuclei	Adipose
42	chr5:35851600-35852400	Enhancers	Placenta	Placenta
43	chr5:35851600-35852400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr5:35851600-35852600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr5:35851600-35852600	Enhancers	HSMMtube	muscle
46	chr5:35851600-35852600	Enhancers	NHEK	skin
47	chr5:35851600-35852800	Enhancers	HMEC	breast
48	chr5:35851600-35853000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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