Variant report

Variant	rs56070901
Chromosome Location	chr4:28245698-28245699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10517137	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16880395	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17618538	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17619415	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17619526	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17680407	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17680905	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17681313	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055254	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2055256	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56024045	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56051836	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56287834	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56294030	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56332108	0.90[ASN][1000 genomes]
rs56406366	0.87[ASN][1000 genomes]
rs58096602	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58186411	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58840373	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59537158	0.85[ASN][1000 genomes]
rs59721547	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61794090	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61794093	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61794094	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61794151	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61794152	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61794153	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61794154	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61794155	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73221833	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73221838	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73221843	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73221852	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73806739	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73806741	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73806742	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878774	chr4:28153349-28254938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878776	chr4:28208093-28267024	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28235000-28279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28241200-28248600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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