Variant report

Variant	rs560729566
Chromosome Location	chr3:136466424-136466425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136462295..136467701-chr3:136468356..136473185,8	MCF-7	breast:
2	chr3:136460640..136463485-chr3:136464653..136466977,3	K562	blood:
3	chr3:136464546..136467728-chr3:136469677..136472541,3	MCF-7	breast:
4	chr3:136275233..136277480-chr3:136465524..136468247,2	K562	blood:

Variant related genes	Relation type
ENSG00000261758	Chromatin interaction
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
2	chr3:136448200-136467600	Weak transcription	HSMM	muscle
3	chr3:136448200-136467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:136448200-136467800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:136448200-136467800	Weak transcription	HSMMtube	muscle
6	chr3:136448600-136467600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:136450400-136467800	Weak transcription	Psoas Muscle	Psoas
9	chr3:136450600-136467800	Weak transcription	Primary B cells from cord blood	blood
10	chr3:136450800-136467800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:136450800-136467800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:136450800-136467800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:136450800-136469000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:136451000-136467800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:136453600-136467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:136453800-136467600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:136454200-136467800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:136454200-136469200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:136454200-136470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:136454400-136467800	Weak transcription	Liver	Liver
21	chr3:136454400-136467800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:136454400-136469200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:136454600-136467800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:136454800-136469200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:136455000-136467000	Weak transcription	Left Ventricle	heart
26	chr3:136455800-136467800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:136456000-136467800	Weak transcription	NH-A	brain
28	chr3:136456200-136467800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:136456400-136467000	Weak transcription	Lung	lung
30	chr3:136456400-136467400	Weak transcription	Right Ventricle	heart
31	chr3:136456400-136468000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:136456600-136467800	Weak transcription	Fetal Intestine Large	intestine
33	chr3:136457400-136470000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:136458400-136470000	Weak transcription	Esophagus	oesophagus
35	chr3:136459800-136467800	Weak transcription	Fetal Kidney	kidney
36	chr3:136460200-136467800	Weak transcription	NHEK	skin
37	chr3:136460400-136468000	Weak transcription	Gastric	stomach
38	chr3:136460800-136467600	Weak transcription	K562	blood
39	chr3:136460800-136467800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:136461200-136467600	Weak transcription	Hela-S3	cervix
41	chr3:136461200-136467600	Weak transcription	Osteobl	bone
42	chr3:136461200-136467800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:136461200-136467800	Weak transcription	A549	lung
44	chr3:136461400-136467600	Weak transcription	NHDF-Ad	bronchial
45	chr3:136462800-136467600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:136462800-136468000	Weak transcription	NHLF	lung
47	chr3:136463200-136467800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:136463200-136467800	Weak transcription	Fetal Brain Female	brain
49	chr3:136463200-136467800	Weak transcription	Fetal Intestine Small	intestine
50	chr3:136463200-136467800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links