Variant report

Variant	rs560730842
Chromosome Location	chr11:63370125-63370126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63369471..63371233-chr11:63378331..63380556,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv33275	chr11:63368995-63370871	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
2	chr11:63347800-63370200	Weak transcription	Psoas Muscle	Psoas
3	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
5	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:63357600-63380400	Weak transcription	NHLF	lung
7	chr11:63357800-63370200	Weak transcription	Pancreas	Pancrea
8	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:63361200-63376800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:63361600-63373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:63362000-63378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:63363000-63377000	Weak transcription	Esophagus	oesophagus
16	chr11:63364400-63370800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:63364600-63376200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:63365600-63370800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:63365600-63373400	Weak transcription	Gastric	stomach
20	chr11:63365800-63370200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:63365800-63370600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:63365800-63370800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:63366200-63370600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:63366400-63370800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:63366400-63370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:63366400-63374400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:63366400-63376600	Weak transcription	Lung	lung
28	chr11:63366800-63370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:63366800-63375800	Weak transcription	Spleen	Spleen
30	chr11:63367000-63372800	Enhancers	Brain Cingulate Gyrus	brain
31	chr11:63367000-63377000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:63367600-63370200	Weak transcription	Right Ventricle	heart
33	chr11:63367800-63370600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:63367800-63370600	Weak transcription	Right Atrium	heart
35	chr11:63367800-63377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:63368800-63372600	Enhancers	Brain Anterior Caudate	brain
37	chr11:63369000-63370600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:63369000-63370600	Enhancers	Adipose Nuclei	Adipose
39	chr11:63369000-63370800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:63369000-63371400	Enhancers	Brain Angular Gyrus	brain
41	chr11:63369000-63374800	Enhancers	Brain Substantia Nigra	brain
42	chr11:63369200-63371400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:63369200-63371600	Enhancers	Ovary	ovary
44	chr11:63369400-63371600	Enhancers	Left Ventricle	heart
45	chr11:63369400-63371800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:63369400-63372800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:63369600-63370200	Enhancers	Fetal Heart	heart
48	chr11:63369600-63370400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:63369600-63370600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:63369600-63370800	Enhancers	Fetal Muscle Leg	muscle

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