Variant report

Variant	rs56074624
Chromosome Location	chr7:50557735-50557736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1137337	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11575422	0.82[EUR][1000 genomes]
rs11575438	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11575453	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11575544	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17133853	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2329368	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55782136	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56069386	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56727653	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58085392	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59239231	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61093871	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62445903	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62445905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791875	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv606905	chr7:50544063-50565963	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50545800-50565800	Weak transcription	HepG2	liver
3	chr7:50548800-50559600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:50548800-50559800	Weak transcription	Fetal Intestine Large	intestine
5	chr7:50548800-50564400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:50554600-50559800	Weak transcription	K562	blood
7	chr7:50556800-50559800	Weak transcription	Fetal Intestine Small	intestine
8	chr7:50556800-50561000	Weak transcription	Ovary	ovary
9	chr7:50557200-50558600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:50557400-50564200	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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