Variant report

Variant	rs56077922
Chromosome Location	chr3:78799471-78799472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78796076..78798225-chr3:78798479..78801260,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11923155	0.81[ASN][1000 genomes]
rs17311036	0.81[ASN][1000 genomes]
rs17311057	0.81[ASN][1000 genomes]
rs17311169	0.81[ASN][1000 genomes]
rs17376753	0.81[ASN][1000 genomes]
rs1865860	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1865861	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1865863	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1961636	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs333483	0.81[ASN][1000 genomes]
rs333506	0.81[ASN][1000 genomes]
rs333507	0.81[ASN][1000 genomes]
rs35077320	0.85[ASN][1000 genomes]
rs3773234	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3773239	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3773240	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3773245	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3821602	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3821603	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57046576	0.85[ASN][1000 genomes]
rs58423115	0.84[EUR][1000 genomes]
rs58792018	0.81[ASN][1000 genomes]
rs59263997	0.85[ASN][1000 genomes]
rs6548595	0.84[ASN][1000 genomes]
rs66496525	0.85[ASN][1000 genomes]
rs66528054	0.85[ASN][1000 genomes]
rs67488304	0.81[ASN][1000 genomes]
rs67703869	0.85[ASN][1000 genomes]
rs72892461	0.85[ASN][1000 genomes]
rs72892501	0.82[ASN][1000 genomes]
rs73109772	0.83[EUR][1000 genomes]
rs73109774	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73113488	0.84[ASN][1000 genomes]
rs73848602	0.81[ASN][1000 genomes]
rs7650002	0.81[ASN][1000 genomes]
rs9861603	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866912	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78783800-78803400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:78787400-78802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:78787800-78800000	Weak transcription	HMEC	breast
5	chr3:78788400-78803400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:78788800-78802600	Weak transcription	NH-A	brain
7	chr3:78793200-78802600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:78793600-78802800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:78796400-78803200	Weak transcription	HepG2	liver
10	chr3:78797200-78802600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:78798600-78810200	Weak transcription	Fetal Lung	lung

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