Variant report

Variant	rs560785493
Chromosome Location	chr6:29606248-29606249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv969292	chr6:29604881-29612154	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29601800-29608600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:29602400-29607200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:29602600-29607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:29602600-29607000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:29602600-29607000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:29602600-29607000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:29602600-29609200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:29602600-29609200	Weak transcription	HMEC	breast
9	chr6:29602800-29607200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:29602800-29609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:29603000-29606800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:29603000-29607000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:29603000-29607200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:29603000-29608400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:29604200-29609200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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