Variant report

Variant	rs560810931
Chromosome Location	chr11:45686999-45687000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf94-5	chr11:45686728-45687144	NONHSAT019041

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	esv19367	chr11:45685695-45687403	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3333567	chr11:45685776-45688474	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
2	chr11:45685400-45687000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
3	chr11:45685600-45687000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:45685600-45687200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:45685600-45687600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:45685600-45687800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr11:45685800-45687000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:45685800-45687000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
9	chr11:45685800-45687000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:45685800-45687000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
11	chr11:45685800-45687200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
12	chr11:45685800-45687600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:45685800-45687600	Active TSS	Aorta	Aorta
14	chr11:45685800-45687600	Active TSS	Brain Cingulate Gyrus	brain
15	chr11:45685800-45688000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:45686000-45687000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:45686000-45687000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
18	chr11:45686000-45687000	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr11:45686000-45687000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
20	chr11:45686000-45687000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:45686000-45687200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:45686000-45687200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:45686000-45687400	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr11:45686000-45687600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr11:45686000-45687600	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr11:45686000-45687800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:45686000-45687800	Bivalent/Poised TSS	A549	lung
28	chr11:45686200-45687000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:45686200-45687000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:45686200-45687000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:45686200-45687000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
32	chr11:45686200-45687000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr11:45686200-45687000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr11:45686200-45687000	Flanking Bivalent TSS/Enh	HMEC	breast
35	chr11:45686200-45687200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:45686200-45687200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:45686200-45687200	Bivalent/Poised TSS	NHEK	skin
38	chr11:45686200-45687400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr11:45686200-45687400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:45686200-45687400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:45686200-45687400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:45686200-45687400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:45686200-45687400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:45686200-45687400	Active TSS	Left Ventricle	heart
45	chr11:45686200-45687400	Active TSS	Ovary	ovary
46	chr11:45686200-45687400	Active TSS	Osteobl	bone
47	chr11:45686200-45687600	Active TSS	H9 Cell Line	embryonic stem cell
48	chr11:45686200-45687600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:45686200-45687600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:45686200-45687600	Active TSS	Brain Angular Gyrus	brain

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