Variant report

Variant	rs560814008
Chromosome Location	chr6:12167560-12167561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12162639..12165269-chr6:12167359..12169995,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3409171	chr6:12166991-12169839	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3343064	chr6:12167191-12169614	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3370652	chr6:12167266-12169314	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12160800-12170800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:12161400-12175800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12164000-12170600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:12164000-12173200	Weak transcription	NH-A	brain
5	chr6:12164200-12169000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:12164200-12174200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:12164200-12174800	Weak transcription	HMEC	breast
8	chr6:12164400-12169000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:12164400-12169200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:12164400-12169400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:12164400-12169600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:12164400-12170400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:12164400-12174800	Weak transcription	NHEK	skin
14	chr6:12164600-12167600	Weak transcription	Left Ventricle	heart
15	chr6:12164600-12167800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:12164600-12168800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:12164600-12168800	Weak transcription	Aorta	Aorta
18	chr6:12164600-12169400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:12164600-12170400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:12164600-12170600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:12164600-12170600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:12164600-12170600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:12164600-12170800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:12164600-12170800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:12164600-12170800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:12164600-12171000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:12164600-12171800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:12164600-12172200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:12164600-12172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:12164600-12173800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:12164600-12174000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:12164600-12175800	Weak transcription	HSMMtube	muscle
33	chr6:12164600-12176000	Weak transcription	Gastric	stomach
34	chr6:12164800-12167600	Weak transcription	Fetal Intestine Small	intestine
35	chr6:12164800-12167600	Weak transcription	Fetal Stomach	stomach
36	chr6:12164800-12167600	Weak transcription	Thymus	Thymus
37	chr6:12164800-12168600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:12164800-12168600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:12164800-12169000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:12164800-12169200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:12164800-12170400	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:12164800-12170600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:12164800-12170800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:12164800-12170800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:12164800-12171000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:12164800-12171200	Weak transcription	Fetal Brain Female	brain
47	chr6:12164800-12171600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:12164800-12171800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:12164800-12173400	Weak transcription	Fetal Kidney	kidney
50	chr6:12164800-12174000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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