Variant report

Variant	rs56081654
Chromosome Location	chr7:66717640-66717641
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10081382	1.00[ASN][1000 genomes]
rs10229944	0.96[EUR][1000 genomes]
rs10240542	1.00[ASN][1000 genomes]
rs10243730	1.00[ASN][1000 genomes]
rs10247355	1.00[ASN][1000 genomes]
rs10264939	1.00[ASN][1000 genomes]
rs10266985	1.00[ASN][1000 genomes]
rs11766952	1.00[ASN][1000 genomes]
rs11769345	1.00[ASN][1000 genomes]
rs11769406	1.00[ASN][1000 genomes]
rs11770922	1.00[ASN][1000 genomes]
rs11773861	1.00[ASN][1000 genomes]
rs12698570	1.00[ASN][1000 genomes]
rs13222551	1.00[ASN][1000 genomes]
rs13222852	1.00[ASN][1000 genomes]
rs13222880	1.00[ASN][1000 genomes]
rs13225831	1.00[ASN][1000 genomes]
rs13239441	1.00[ASN][1000 genomes]
rs13241749	1.00[ASN][1000 genomes]
rs13246453	1.00[ASN][1000 genomes]
rs2003206	0.96[EUR][1000 genomes]
rs2421427	1.00[ASN][1000 genomes]
rs28524910	1.00[ASN][1000 genomes]
rs28828435	1.00[ASN][1000 genomes]
rs28875922	1.00[ASN][1000 genomes]
rs35955950	1.00[ASN][1000 genomes]
rs3980761	1.00[ASN][1000 genomes]
rs4266531	1.00[ASN][1000 genomes]
rs55647045	1.00[ASN][1000 genomes]
rs56224758	1.00[ASN][1000 genomes]
rs56376467	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66521840	1.00[ASN][1000 genomes]
rs66669140	1.00[ASN][1000 genomes]
rs66697341	1.00[ASN][1000 genomes]
rs66701377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67794814	1.00[ASN][1000 genomes]
rs67934921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68034409	1.00[ASN][1000 genomes]
rs6956400	1.00[ASN][1000 genomes]
rs6958056	1.00[ASN][1000 genomes]
rs6968898	1.00[ASN][1000 genomes]
rs6973163	1.00[ASN][1000 genomes]
rs73144570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783776	1.00[ASN][1000 genomes]
rs7791848	1.00[ASN][1000 genomes]
rs7792207	1.00[ASN][1000 genomes]
rs7795025	1.00[ASN][1000 genomes]
rs7797194	1.00[ASN][1000 genomes]
rs7804288	1.00[ASN][1000 genomes]
rs9654770	1.00[ASN][1000 genomes]
rs9691420	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:66694800-66766600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:66701600-66766600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:66705000-66724400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:66716000-66718000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr7:66716200-66717800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:66716200-66717800	ZNF genes & repeats	Fetal Stomach	stomach
8	chr7:66716800-66717800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:66717000-66717800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr7:66717000-66717800	ZNF genes & repeats	GM12878-XiMat	blood
11	chr7:66717000-66718600	ZNF genes & repeats	Fetal Lung	lung
12	chr7:66717400-66726400	Weak transcription	HSMMtube	muscle
13	chr7:66717400-66766200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:66717400-66766400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:66717600-66722600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:66717600-66722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:66717600-66732800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:66717600-66735400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:66717600-66756200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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