Variant report

Variant	rs56081681
Chromosome Location	chr15:38982114-38982115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:38982044..38984974-chr15:38985840..38987447,2	MCF-7	breast:
2	chr15:38974727..38979179-chr15:38980706..38984151,5	K562	blood:
3	chr15:38853540..38858003-chr15:38979114..38983225,5	MCF-7	breast:
4	chr15:38855765..38857337-chr15:38979685..38982471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172575	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17654449	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56081681	RASGRP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38973600-38984200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:38974000-38983800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:38974400-38983200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr15:38974400-38984800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:38974800-38983800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:38974800-38983800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:38975000-38982400	Enhancers	Thymus	Thymus
8	chr15:38975000-38983000	Enhancers	Fetal Thymus	thymus
9	chr15:38975200-38983400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:38976800-38987200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:38978800-38990800	Weak transcription	Right Atrium	heart
12	chr15:38979000-38982400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:38979000-38984600	Enhancers	Primary T cells from cord blood	blood
14	chr15:38979200-38983400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr15:38980400-38983000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:38980600-38982200	Enhancers	GM12878-XiMat	blood
17	chr15:38980600-38983200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:38980600-38984200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:38980800-38984400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr15:38981000-38983400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:38981000-38984400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:38981200-38983400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:38981400-38984600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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