Variant report

Variant	rs560819376
Chromosome Location	chr12:105949931-105949932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv18514	chr12:105949857-105951376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105938800-105964600	Weak transcription	Aorta	Aorta
2	chr12:105945400-105955000	Weak transcription	HSMMtube	muscle
3	chr12:105947200-105950000	Enhancers	Hela-S3	cervix
4	chr12:105948200-105954000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:105948200-105955800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:105948400-105950000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:105948400-105955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:105949000-105950200	Enhancers	A549	lung
9	chr12:105949200-105950000	Genic enhancers	HUVEC	blood vessel
10	chr12:105949400-105950000	Enhancers	Right Atrium	heart
11	chr12:105949400-105950000	Enhancers	Right Ventricle	heart
12	chr12:105949600-105950000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr12:105949600-105950000	Enhancers	Pancreas	Pancrea
14	chr12:105949600-105950000	Enhancers	HepG2	liver
15	chr12:105949600-105951800	Weak transcription	Left Ventricle	heart
16	chr12:105949600-105955000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:105949800-105950000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:105949800-105950200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:105949800-105955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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