Variant report

Variant	rs560821992
Chromosome Location	chr3:112079834-112079835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877341	chr3:112079277-112125521	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112054800-112083000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:112055600-112080200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:112061200-112083000	Weak transcription	Colonic Mucosa	Colon
4	chr3:112062400-112083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:112066000-112089800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112067200-112080400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:112069200-112084000	Weak transcription	Fetal Kidney	kidney
8	chr3:112069200-112095400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:112070200-112086200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:112070600-112080400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:112070600-112080400	Weak transcription	Brain Anterior Caudate	brain
12	chr3:112070600-112086200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:112070600-112088800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:112070800-112084600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:112070800-112090600	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:112071000-112083000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:112071200-112083800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:112072000-112080600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:112072400-112080400	Weak transcription	Fetal Brain Male	brain
20	chr3:112073000-112080400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:112077000-112083000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:112077200-112081200	Active TSS	Right Atrium	heart
23	chr3:112077200-112082000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:112077200-112094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:112077600-112080400	Active TSS	Fetal Muscle Leg	muscle
26	chr3:112077600-112080400	Weak transcription	Psoas Muscle	Psoas
27	chr3:112077600-112080600	Weak transcription	Primary T cells from cord blood	blood
28	chr3:112077600-112082800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:112077600-112083000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:112077600-112107200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr3:112077800-112080400	Weak transcription	Right Ventricle	heart
32	chr3:112077800-112082600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:112077800-112082800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:112077800-112083000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr3:112077800-112083000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:112077800-112085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:112077800-112085400	Weak transcription	Ovary	ovary
38	chr3:112078000-112080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:112078000-112082800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:112078000-112083000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr3:112078000-112083000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:112078000-112083000	Weak transcription	HMEC	breast
43	chr3:112078000-112085200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:112078200-112080200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:112078200-112083000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:112078200-112086400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:112078800-112080400	Enhancers	Placenta	Placenta
48	chr3:112078800-112081400	Strong transcription	GM12878-XiMat	blood
49	chr3:112078800-112081600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:112079000-112080400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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