Variant report

Variant	rs560822201
Chromosome Location	chr10:43446910-43446911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43436378..43438483-chr10:43446013..43449214,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
8	nsv971907	chr10:43435400-43449867	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1038102	chr10:43441601-43642908	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43446000-43447600	Enhancers	Fetal Lung	lung
2	chr10:43446200-43447200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:43446200-43448000	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr10:43446400-43447400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr10:43446400-43448000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:43446600-43447000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:43446600-43447000	Bivalent Enhancer	Colon Smooth Muscle	Colon
8	chr10:43446600-43447000	Enhancers	Pancreas	Pancrea
9	chr10:43446600-43447200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:43446600-43447200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:43446600-43447200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:43446600-43447400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:43446600-43447400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
14	chr10:43446600-43447600	Bivalent Enhancer	Fetal Brain Male	brain
15	chr10:43446600-43447600	Bivalent Enhancer	Placenta	Placenta
16	chr10:43446600-43447600	Enhancers	Ovary	ovary
17	chr10:43446600-43447800	Enhancers	Fetal Heart	heart
18	chr10:43446600-43448000	Enhancers	Esophagus	oesophagus
19	chr10:43446600-43448000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr10:43446800-43447000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr10:43446800-43447000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:43446800-43447000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr10:43446800-43447000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr10:43446800-43447000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:43446800-43447000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr10:43446800-43447000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:43446800-43447000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:43446800-43447000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:43446800-43447000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
30	chr10:43446800-43447000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
31	chr10:43446800-43447000	Bivalent Enhancer	Brain Substantia Nigra	brain
32	chr10:43446800-43447000	Bivalent/Poised TSS	Colonic Mucosa	Colon
33	chr10:43446800-43447000	Bivalent Enhancer	Right Ventricle	heart
34	chr10:43446800-43447000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
35	chr10:43446800-43447000	Bivalent Enhancer	NHDF-Ad	bronchial
36	chr10:43446800-43447200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:43446800-43447200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
38	chr10:43446800-43447200	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr10:43446800-43447200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr10:43446800-43447200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr10:43446800-43447600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:43446800-43447600	Bivalent Enhancer	Fetal Brain Female	brain
43	chr10:43446800-43447600	Enhancers	Psoas Muscle	Psoas
44	chr10:43446800-43447800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:43446800-43447800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:43446800-43447800	Bivalent Enhancer	Fetal Intestine Small	intestine
47	chr10:43446800-43447800	Enhancers	Spleen	Spleen
48	chr10:43446800-43448000	Active TSS	H9 Cell Line	embryonic stem cell
49	chr10:43446800-43448000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
50	chr10:43446800-43448000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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