Variant report

Variant	rs560827615
Chromosome Location	chr1:192570801-192570802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv516016	chr1:192570707-192572111	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192569800-192571200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:192570000-192571000	Enhancers	GM12878-XiMat	blood
3	chr1:192570000-192571200	Enhancers	HSMMtube	muscle
4	chr1:192570200-192571200	Enhancers	Dnd41	blood
5	chr1:192570400-192571000	Enhancers	Aorta	Aorta
6	chr1:192570400-192571200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:192570400-192571200	Enhancers	NH-A	brain
8	chr1:192570400-192571400	Enhancers	HSMM	muscle
9	chr1:192570400-192573800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:192570600-192571000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:192570600-192571000	Enhancers	HUVEC	blood vessel
12	chr1:192570600-192571400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:192570600-192571400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:192570600-192574600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:192570800-192571000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:192570800-192571000	Enhancers	Fetal Heart	heart
17	chr1:192570800-192571200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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