Variant report

Variant	rs560843323
Chromosome Location	chr1:168578471-168578472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168406270..168408708-chr1:168577956..168579929,2	MCF-7	breast:
2	chr1:168578094..168580109-chr1:168583246..168584781,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014626	chr1:168441288-168642731	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535196	chr1:168441288-168642731	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1011821	chr1:168441488-168642592	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv535197	chr1:168441488-168642592	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1008852	chr1:168449940-168643905	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv535198	chr1:168449940-168643905	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv3443	chr1:168577582-168622305	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168569200-168582600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168569600-168578600	Weak transcription	Left Ventricle	heart
3	chr1:168569600-168582400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:168573200-168582200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:168573400-168578800	Weak transcription	Right Ventricle	heart
6	chr1:168577000-168578800	Enhancers	Aorta	Aorta
7	chr1:168577000-168578800	Weak transcription	Psoas Muscle	Psoas
8	chr1:168577800-168578600	Enhancers	Stomach Smooth Muscle	stomach
9	chr1:168577800-168579600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:168577800-168579600	Enhancers	Fetal Muscle Leg	muscle
11	chr1:168578000-168579000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:168578000-168579200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:168578000-168579200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:168578000-168579600	Enhancers	Colon Smooth Muscle	Colon
15	chr1:168578000-168579600	Enhancers	Spleen	Spleen
16	chr1:168578200-168578600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:168578200-168578600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:168578200-168578600	Enhancers	Osteobl	bone
19	chr1:168578200-168578800	Enhancers	Fetal Muscle Trunk	muscle
20	chr1:168578200-168579000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:168578200-168579200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr1:168578200-168582200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:168578400-168578600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:168578400-168578600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:168578400-168578600	Enhancers	Adipose Nuclei	Adipose
26	chr1:168578400-168578600	Enhancers	Rectal Smooth Muscle	rectum
27	chr1:168578400-168578600	Enhancers	HSMMtube	muscle
28	chr1:168578400-168578800	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr1:168578400-168578800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:168578400-168578800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr1:168578400-168579000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr1:168578400-168579000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr1:168578400-168579000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:168578400-168579000	Enhancers	Fetal Kidney	kidney
35	chr1:168578400-168579000	Bivalent Enhancer	Fetal Stomach	stomach
36	chr1:168578400-168579000	Enhancers	Right Atrium	heart
37	chr1:168578400-168579200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:168578400-168579200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:168578400-168579200	Enhancers	Esophagus	oesophagus
40	chr1:168578400-168579200	Enhancers	Fetal Heart	heart
41	chr1:168578400-168579200	Enhancers	Placenta	Placenta
42	chr1:168578400-168579200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr1:168578400-168579200	Enhancers	NH-A	brain
44	chr1:168578400-168579400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links