Variant report

Variant	rs56085814
Chromosome Location	chr18:40388542-40388543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3337581	chr18:40387154-40390952	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40387200-40389400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:40387400-40388800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:40387400-40389000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:40388400-40389000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:40388400-40389200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:40388400-40389200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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