Variant report

Variant	rs56086752
Chromosome Location	chr3:111506405-111506406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3922704	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55809361	0.82[EUR][1000 genomes]
rs56206679	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6782962	0.85[EUR][1000 genomes]
rs6795090	0.85[EUR][1000 genomes]
rs7630035	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111501600-111513600	Weak transcription	Pancreas	Pancrea
5	chr3:111501600-111518800	Weak transcription	A549	lung
6	chr3:111502200-111506800	Weak transcription	HepG2	liver
7	chr3:111503400-111508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:111503400-111508800	Weak transcription	Left Ventricle	heart
9	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
11	chr3:111504800-111507000	Enhancers	Liver	Liver
12	chr3:111505000-111506600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:111505000-111507000	Enhancers	Fetal Heart	heart
14	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:111506000-111507600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:111506000-111509000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:111506400-111506600	Enhancers	Right Atrium	heart
18	chr3:111506400-111507800	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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