Variant report

Variant	rs56088032
Chromosome Location	chr12:60754497-60754498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60752778..60755096-chr12:60757481..60759676,2	K562	blood:

Variant related genes	Relation type
ENSG00000251822	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1021887	0.82[EUR][1000 genomes]
rs10784046	0.82[EUR][1000 genomes]
rs10877422	0.87[EUR][1000 genomes]
rs11173396	0.83[EUR][1000 genomes]
rs11173405	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11173407	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11173414	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11173416	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11173418	0.87[EUR][1000 genomes]
rs11173437	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11173438	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11173439	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125188	0.83[EUR][1000 genomes]
rs11536139	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12228227	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12231371	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12231943	0.81[EUR][1000 genomes]
rs12580142	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12580151	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1319633	0.87[EUR][1000 genomes]
rs1394328	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1394330	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1504459	0.87[EUR][1000 genomes]
rs1504460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1504462	0.87[EUR][1000 genomes]
rs1504463	0.87[EUR][1000 genomes]
rs1504464	0.87[EUR][1000 genomes]
rs1532810	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1532811	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1566847	0.88[EUR][1000 genomes]
rs1580916	0.84[EUR][1000 genomes]
rs1604865	0.84[EUR][1000 genomes]
rs1604866	0.82[EUR][1000 genomes]
rs1604867	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1604868	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1604869	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17606011	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17606158	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17606266	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17606387	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17606458	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17669416	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1827638	0.84[EUR][1000 genomes]
rs1875860	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1995514	0.82[ASN][1000 genomes]
rs2102257	0.84[EUR][1000 genomes]
rs2102258	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2262939	0.84[EUR][1000 genomes]
rs2363585	0.82[ASN][1000 genomes]
rs2363587	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455998	0.81[EUR][1000 genomes]
rs2655842	0.84[EUR][1000 genomes]
rs2655843	0.84[EUR][1000 genomes]
rs2655846	0.83[EUR][1000 genomes]
rs2655848	0.84[EUR][1000 genomes]
rs2655856	0.83[EUR][1000 genomes]
rs2655893	0.84[EUR][1000 genomes]
rs2731487	0.84[EUR][1000 genomes]
rs2731488	0.84[EUR][1000 genomes]
rs2731491	0.84[EUR][1000 genomes]
rs2731492	0.84[EUR][1000 genomes]
rs3901470	0.83[EUR][1000 genomes]
rs4353306	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4583008	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4616072	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4638340	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4758863	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55810124	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56173629	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60798845	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61923156	0.81[EUR][1000 genomes]
rs61923157	0.81[EUR][1000 genomes]
rs61925560	0.83[EUR][1000 genomes]
rs6581318	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7136835	0.81[EUR][1000 genomes]
rs7307028	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7961791	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7971161	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7972668	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7975549	0.81[EUR][1000 genomes]
rs905722	0.83[EUR][1000 genomes]
rs924835	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2762983	chr12:60735475-60767081	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3500240	chr12:60752085-60759033	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3500239	chr12:60752535-60758933	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv8977	chr12:60752953-60758579	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3487753	chr12:60753082-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3500245	chr12:60753104-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3487764	chr12:60753106-60757953	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437755	chr12:60753107-60757930	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3500247	chr12:60753108-60758005	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3487742	chr12:60753130-60757990	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3500243	chr12:60753131-60757946	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3487775	chr12:60753136-60757944	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3500244	chr12:60753158-60757952	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3500246	chr12:60753162-60757948	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3500242	chr12:60753213-60757907	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3487786	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3500248	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv20278	chr12:60753340-60757908	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links