Variant report

Variant	rs560887
Chromosome Location	chr2:169763148-169763149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs537183	0.94[ASN][1000 genomes]
rs557462	0.94[ASN][1000 genomes]
rs563694	0.94[ASN][1000 genomes]
rs573225	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv459943	chr2:169756930-169799010	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv583600	chr2:169756930-169799010	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:11)

Disease	PMID	Source
Fasting plasma glucose	18451265	GWAS catalog
Fasting glucose-related traits (interaction with BMI)	22581228	GWAS catalog
Fasting glucose-related traits	20081858	GWAS catalog
Metabolite levels	22916037	GWAS catalog
Metabolic syndrome	22399527	GWAS catalog
Glycated hemoglobin levels	24405752	GWAS catalog
Fasting plasma glucose	19060907	GWAS catalog
Metabolic traits	19060910	GWAS catalog
Fasting plasma glucose	22508271	GWAS catalog
Glycemic traits (pregnancy)	23903356	GWAS catalog
Metabolite levels	22286219	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169760600-169763400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:169761400-169764400	Weak transcription	K562	blood
3	chr2:169762200-169765800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:169762400-169764800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:169762800-169765200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:169763000-169763600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr2:169763000-169763800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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