Variant report

Variant	rs56090995
Chromosome Location	chr8:6811238-6811239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:6811180-6811330	HL-60	blood:	n/a	n/a
2	SPI1	chr8:6811134-6811420	GM12891	blood:	n/a	n/a
3	SPI1	chr8:6811165-6811421	K562	blood:	n/a	n/a
4	CTCF	chr8:6811100-6811250	GM12865	blood:	n/a	n/a
5	CTCF	chr8:6811180-6811330	GM12874	blood:	n/a	n/a
6	CTCF	chr8:6811212-6811289	GM19238	blood:	n/a	n/a
7	SPI1	chr8:6811213-6811424	GM12878	blood:	n/a	n/a
8	CTCF	chr8:6811229-6811298	GM19240	blood:	n/a	n/a
9	CTCF	chr8:6811140-6811290	GM12873	blood:	n/a	n/a
10	CTCF	chr8:6811237-6811257	GM20000	blood:	n/a	n/a
11	CTCF	chr8:6811200-6811350	K562	blood:	n/a	n/a
12	CTCF	chr8:6811120-6811270	NB4	blood:	n/a	n/a
13	MAX	chr8:6810979-6811259	NB4	blood:	n/a	chr8:6811079-6811088 chr8:6811079-6811088 chr8:6811074-6811093 chr8:6811077-6811087 chr8:6811078-6811089 chr8:6811078-6811088 chr8:6811075-6811090 chr8:6811078-6811089 chr8:6811080-6811087
14	ELF1	chr8:6811192-6811486	K562	blood:	n/a	chr8:6811303-6811316 chr8:6811304-6811315
15	CTCF	chr8:6811180-6811330	HepG2	liver:	n/a	n/a
16	CTCF	chr8:6811160-6811310	GM12871	blood:	n/a	n/a
17	CTCF	chr8:6811100-6811250	GM12875	blood:	n/a	n/a
18	SPI1	chr8:6811167-6811424	K562	blood:	n/a	n/a
19	CTCF	chr8:6811220-6811370	GM12878	blood:	n/a	n/a
20	CTCF	chr8:6811084-6811409	K562	blood:	n/a	n/a
21	CTCF	chr8:6811120-6811270	GM12872	blood:	n/a	n/a
22	TEAD4	chr8:6811110-6811462	K562	blood:	n/a	n/a
23	CTCF	chr8:6811137-6811340	K562	blood:	n/a	n/a
24	SPI1	chr8:6811134-6811503	GM12891	blood:	n/a	n/a
25	SPI1	chr8:6810990-6811599	HL-60	blood:	n/a	n/a
26	CTCF	chr8:6811170-6811322	GM12878	blood:	n/a	n/a
27	CTCF	chr8:6811180-6811330	GM12864	blood:	n/a	n/a
28	SPI1	chr8:6811096-6811600	HL-60	blood:	n/a	n/a
29	CTCF	chr8:6811160-6811310	GM12873	blood:	n/a	n/a
30	CTCF	chr8:6811180-6811330	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6810171..6811870-chr8:6814020..6816721,2	K562	blood:

Variant related genes	Relation type
DEFA8P	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10503362	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17078407	0.98[AFR][1000 genomes]
rs17381964	0.81[EUR][1000 genomes]
rs4355795	0.81[EUR][1000 genomes]
rs55874448	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56155948	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56342413	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57380867	0.81[AFR][1000 genomes]
rs60072769	0.95[AFR][1000 genomes]
rs61753587	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62488513	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62488514	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62488516	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62488521	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62488523	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62488525	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62488526	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6986138	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7005274	0.82[EUR][1000 genomes]
rs73195972	0.89[EUR][1000 genomes]
rs73523738	0.81[AFR][1000 genomes]
rs7831048	0.81[AFR][1000 genomes]
rs880145	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv933075	chr8:6456475-7366650	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv465436	chr8:6568201-6921404	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv610006	chr8:6568201-6921404	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1027883	chr8:6570354-7250368	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv1034812	chr8:6578390-6920312	Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv949532	chr8:6579563-6999220	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1015244	chr8:6638899-6988914	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv2752262	chr8:6638899-7011075	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv1025587	chr8:6651912-7171085	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv465437	chr8:6655391-6829085	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv610007	chr8:6655391-6829085	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1031296	chr8:6673296-6920312	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv890062	chr8:6717107-6883291	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv890063	chr8:6723033-6878837	Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv890064	chr8:6728298-6811559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv610010	chr8:6728298-6925869	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv890065	chr8:6728298-6940656	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
21	esv1848403	chr8:6729115-6920149	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv429845	chr8:6729645-7690320	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
23	nsv1028441	chr8:6730766-6920312	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv528374	chr8:6731503-6921404	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	esv1847373	chr8:6731720-6920149	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv890067	chr8:6740938-6940656	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv831221	chr8:6754220-6936512	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
28	nsv1019061	chr8:6790242-6825536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv524367	chr8:6790710-6829085	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	esv2764078	chr8:6791559-6812249	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv890068	chr8:6793581-6887956	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
32	esv1820995	chr8:6802546-6882130	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	esv3353556	chr8:6807241-6815914	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv1016218	chr8:6808907-7226424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6794600-6829200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:6804400-6812400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:6806400-6813000	Enhancers	Fetal Thymus	thymus
4	chr8:6808800-6812200	Enhancers	Thymus	Thymus
5	chr8:6810800-6811800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr8:6811000-6818000	Enhancers	Dnd41	blood
7	chr8:6811200-6811800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

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