Variant report

Variant	rs560914050
Chromosome Location	chr1:210069433-210069434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1821635	chr1:210068117-210085756	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210066600-210070800	Enhancers	NHEK	skin
2	chr1:210066800-210070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:210066800-210070800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:210067200-210069600	Weak transcription	HSMMtube	muscle
5	chr1:210067400-210069600	Weak transcription	NHDF-Ad	bronchial
6	chr1:210067600-210071000	Enhancers	HMEC	breast
7	chr1:210067800-210071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:210068000-210070200	Enhancers	Primary T cells from cord blood	blood
9	chr1:210068000-210070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:210068000-210070400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:210068200-210069600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:210068200-210070200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:210068200-210070200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:210068200-210070200	Enhancers	HUVEC	blood vessel
15	chr1:210068200-210070400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:210068200-210070600	Enhancers	Osteobl	bone
17	chr1:210068200-210070800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:210068800-210069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:210068800-210069600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:210068800-210070000	Flanking Active TSS	Hela-S3	cervix
21	chr1:210068800-210070000	Enhancers	HSMM	muscle
22	chr1:210069000-210069600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:210069000-210070600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:210069400-210069600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:210069400-210069800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:210069400-210069800	Enhancers	Placenta	Placenta
27	chr1:210069400-210070000	Flanking Active TSS	NH-A	brain

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