Variant report

Variant	rs560916423
Chromosome Location	chr14:77735834-77735835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77719388..77722055-chr14:77734428..77736002,2	K562	blood:
2	chr14:77734159..77735864-chr14:77768086..77770638,2	MCF-7	breast:
3	chr14:77656618..77658691-chr14:77734209..77736747,2	MCF-7	breast:
4	chr14:77734678..77737344-chr14:77778616..77780685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	esv3373764	chr14:77735746-77736439	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77735200-77736000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
2	chr14:77735400-77736000	Enhancers	HMEC	breast
3	chr14:77735400-77736000	Bivalent Enhancer	NHEK	skin
4	chr14:77735400-77736400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:77735400-77736400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:77735400-77736600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:77735400-77737400	Enhancers	Dnd41	blood
8	chr14:77735600-77736000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:77735600-77736200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr14:77735600-77736200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
11	chr14:77735600-77736600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:77735600-77736800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:77735600-77737200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr14:77735600-77738000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr14:77735600-77738000	Enhancers	Pancreas	Pancrea
16	chr14:77735800-77736000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr14:77735800-77736000	Bivalent Enhancer	Fetal Thymus	thymus
18	chr14:77735800-77736000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
19	chr14:77735800-77736400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:77735800-77737000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:77735800-77737000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links