Variant report

Variant	rs560916626
Chromosome Location	chr14:69922827-69922828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69865072..69867138-chr14:69919938..69922880,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052107	chr14:69922552-69969297	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1039230	chr14:69922552-69972002	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1039192	chr14:69922552-69976694	Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
4	chr14:69891200-69923000	Weak transcription	NHLF	lung
5	chr14:69892200-69931400	Weak transcription	K562	blood
6	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:69893400-69923000	Weak transcription	Lung	lung
8	chr14:69893600-69923200	Weak transcription	Gastric	stomach
9	chr14:69893600-69925000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:69894000-69924400	Weak transcription	Brain Angular Gyrus	brain
11	chr14:69902400-69927000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:69903600-69937800	Weak transcription	Psoas Muscle	Psoas
13	chr14:69906800-69924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:69906800-69924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:69909000-69933200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69910200-69923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:69910400-69927200	Weak transcription	NHEK	skin
18	chr14:69910800-69923000	Weak transcription	Thymus	Thymus
19	chr14:69911600-69925600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:69915800-69932600	Weak transcription	Fetal Heart	heart
21	chr14:69916200-69927000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:69916400-69926400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:69918400-69929200	Strong transcription	Primary T cells from cord blood	blood
24	chr14:69919200-69929600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:69919600-69926200	Strong transcription	Primary B cells from cord blood	blood
26	chr14:69919600-69929000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr14:69919800-69924000	Strong transcription	GM12878-XiMat	blood
28	chr14:69919800-69925000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:69919800-69925800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:69919800-69926000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:69919800-69926000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:69919800-69926000	Strong transcription	Ovary	ovary
33	chr14:69919800-69926000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr14:69919800-69926400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr14:69919800-69926600	Strong transcription	HSMM	muscle
36	chr14:69919800-69928600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:69919800-69929000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:69919800-69929000	Strong transcription	Dnd41	blood
39	chr14:69919800-69929400	Strong transcription	Fetal Intestine Large	intestine
40	chr14:69919800-69929600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:69919800-69929800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr14:69920000-69926000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:69920000-69926200	Strong transcription	Liver	Liver
44	chr14:69920000-69926200	Strong transcription	Osteobl	bone
45	chr14:69920000-69926400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr14:69920000-69928600	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr14:69920000-69928800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr14:69920000-69929000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr14:69920000-69929000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr14:69920000-69929000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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