Variant report

Variant	rs560935851
Chromosome Location	chr10:91021077-91021078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91003937..91005930-chr10:91020803..91022906,2	K562	blood:
2	chr10:91020387..91022060-chr10:91024157..91025732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266769	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
3	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:91019800-91022400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr10:91020000-91021200	Enhancers	Brain Substantia Nigra	brain
6	chr10:91020000-91022000	Enhancers	Hela-S3	cervix
7	chr10:91020000-91023200	Enhancers	HMEC	breast
8	chr10:91020000-91023600	Enhancers	Brain Angular Gyrus	brain
9	chr10:91020000-91023600	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:91020000-91023600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:91020000-91023600	Enhancers	NHEK	skin
12	chr10:91020000-91024000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:91020200-91022400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91020200-91023000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:91020200-91023000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91020200-91023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:91020200-91024200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr10:91020400-91021200	Enhancers	NHLF	lung
19	chr10:91020400-91022200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:91020400-91022600	Enhancers	A549	lung
21	chr10:91020400-91023000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:91020400-91023400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91020400-91023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:91020400-91023600	Enhancers	NHDF-Ad	bronchial
25	chr10:91020400-91023800	Enhancers	Osteobl	bone
26	chr10:91020600-91021200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:91020600-91022000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:91020600-91023400	Weak transcription	Pancreas	Pancrea
29	chr10:91020600-91024200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:91020600-91025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:91020600-91027800	Weak transcription	Right Ventricle	heart
32	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
33	chr10:91020800-91021200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:91020800-91021400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:91020800-91021800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:91020800-91021800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:91020800-91021800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:91020800-91021800	Weak transcription	Adipose Nuclei	Adipose
39	chr10:91020800-91021800	Weak transcription	Fetal Intestine Small	intestine
40	chr10:91020800-91021800	Weak transcription	NH-A	brain
41	chr10:91020800-91022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:91020800-91022000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:91020800-91022000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:91020800-91022000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:91020800-91022000	Weak transcription	Fetal Intestine Large	intestine
46	chr10:91020800-91022000	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:91020800-91022000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:91020800-91022000	Weak transcription	HSMMtube	muscle
49	chr10:91020800-91022200	Weak transcription	Stomach Mucosa	stomach
50	chr10:91020800-91023000	Weak transcription	Fetal Heart	heart

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