Variant report

Variant	rs56093896
Chromosome Location	chr2:114103966-114103967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12616641	0.84[EUR][1000 genomes]
rs1807282	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1823125	0.95[EUR][1000 genomes]
rs2863957	0.94[EUR][1000 genomes]
rs4618068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60873293	0.95[EUR][1000 genomes]
rs62158166	0.82[EUR][1000 genomes]
rs62158168	0.80[EUR][1000 genomes]
rs62158169	0.88[EUR][1000 genomes]
rs62158170	0.89[EUR][1000 genomes]
rs62158206	0.92[EUR][1000 genomes]
rs62158211	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62158213	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6737318	0.92[EUR][1000 genomes]
rs7556815	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757826	chr2:114074949-114253780	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759085	chr2:114074949-114428678	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56093896	AC016745.3	cis	Thyroid	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114083400-114108000	Weak transcription	Lung	lung
2	chr2:114098000-114107600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:114098200-114114800	Weak transcription	NHEK	skin
4	chr2:114099400-114116000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:114100400-114113200	Weak transcription	Fetal Stomach	stomach
6	chr2:114101200-114106000	Weak transcription	Primary T cells from cord blood	blood
7	chr2:114101800-114105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:114101800-114106000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:114101800-114115000	Weak transcription	HMEC	breast
10	chr2:114101800-114116000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:114102400-114105400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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