Variant report

Variant	rs560944913
Chromosome Location	chr7:26437423-26437424
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr7:26437331-26439435	SH-SY5Y	brain:	n/a	chr7:26437759-26437767
2	PML	chr7:26437402-26439224	GM12878	blood:	n/a	n/a
3	GATA3	chr7:26437294-26437750	T-47D	breast:	n/a	n/a
4	GATA3	chr7:26437316-26438380	T-47D	breast:	n/a	chr7:26437759-26437767
5	SMC3	chr7:26437303-26439673	SK-N-SH	brain:	n/a	chr7:26437938-26437952 chr7:26437938-26437946
6	MAX	chr7:26437408-26439277	A549	lung:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
7	RAD21	chr7:26437349-26439982	SK-N-SH	brain:	n/a	chr7:26437850-26437863
8	REST	chr7:26437399-26439723	H1-neurons	neurons:	n/a	chr7:26437782-26437795
9	MTA3	chr7:26437384-26438005	GM12878	blood:	n/a	n/a
10	MYC	chr7:26437401-26438543	H1-hESC	embryonic stem cell:	n/a	chr7:26437959-26437969 chr7:26437752-26437761
11	CTCF	chr7:26437392-26439415	SK-N-SH	brain:	n/a	chr7:26437939-26437952 chr7:26437939-26437948
12	MXI1	chr7:26437419-26439399	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000214870	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3374116	chr7:26436952-26439800	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26434000-26437600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:26435800-26437600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:26436000-26438600	Enhancers	Fetal Brain Male	brain
4	chr7:26436400-26437600	Enhancers	Fetal Brain Female	brain
5	chr7:26436600-26437600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:26436600-26437600	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:26436600-26437800	Enhancers	Spleen	Spleen
8	chr7:26436800-26437600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:26437000-26437600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:26437000-26437600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:26437000-26437600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:26437000-26437600	Enhancers	Fetal Intestine Small	intestine
13	chr7:26437000-26437600	Enhancers	Placenta	Placenta
14	chr7:26437000-26437800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
15	chr7:26437000-26438000	Enhancers	Fetal Heart	heart
16	chr7:26437200-26437600	Bivalent Enhancer	Fetal Thymus	thymus
17	chr7:26437200-26439400	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr7:26437400-26437600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:26437400-26437600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
20	chr7:26437400-26437600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:26437400-26437600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr7:26437400-26437600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr7:26437400-26437600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr7:26437400-26437600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:26437400-26437600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:26437400-26437600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:26437400-26437600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
28	chr7:26437400-26437600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
29	chr7:26437400-26437600	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr7:26437400-26437600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
31	chr7:26437400-26437600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
32	chr7:26437400-26437600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
33	chr7:26437400-26437600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:26437400-26437600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
35	chr7:26437400-26437600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr7:26437400-26437600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:26437400-26437600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:26437400-26437600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:26437400-26437600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:26437400-26437600	Enhancers	Liver	Liver
41	chr7:26437400-26437600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
42	chr7:26437400-26437600	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr7:26437400-26437600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
44	chr7:26437400-26437600	Enhancers	Lung	lung
45	chr7:26437400-26437600	Enhancers	Pancreas	Pancrea
46	chr7:26437400-26437600	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr7:26437400-26437600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr7:26437400-26437600	Flanking Active TSS	A549	lung
49	chr7:26437400-26437600	Enhancers	HMEC	breast
50	chr7:26437400-26437600	Enhancers	HUVEC	blood vessel

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