Variant report

Variant	rs560957123
Chromosome Location	chr9:6518309-6518310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:6516849..6518888-chr9:6521453..6523458,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1029766	chr9:6437020-6523605	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
12	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
13	esv2761298	chr9:6505897-6544766	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv934176	chr9:6517535-6644738	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6463600-6518400	Weak transcription	Fetal Brain Male	brain
2	chr9:6498800-6554400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:6499000-6528400	Weak transcription	Pancreas	Pancrea
4	chr9:6506200-6518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:6506400-6521800	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:6506400-6530600	Weak transcription	Gastric	stomach
7	chr9:6506800-6519200	Weak transcription	Fetal Kidney	kidney
8	chr9:6507000-6523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:6507000-6524800	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:6507000-6534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:6507200-6522400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:6507800-6521800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:6508000-6520200	Weak transcription	Fetal Intestine Small	intestine
14	chr9:6508200-6519400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:6508200-6521800	Weak transcription	Fetal Stomach	stomach
16	chr9:6508400-6519600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:6508400-6521000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:6508400-6521800	Weak transcription	Primary B cells from cord blood	blood
19	chr9:6508400-6523600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:6508400-6525000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:6508400-6526400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:6508400-6526600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr9:6508400-6528200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:6508400-6530600	Weak transcription	Left Ventricle	heart
25	chr9:6508600-6524200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:6508600-6537800	Weak transcription	HMEC	breast
27	chr9:6508600-6538200	Weak transcription	NHEK	skin
28	chr9:6508800-6518600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:6508800-6519000	Weak transcription	Dnd41	blood
30	chr9:6508800-6520200	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:6508800-6521400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr9:6508800-6521800	Weak transcription	GM12878-XiMat	blood
33	chr9:6508800-6523800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:6508800-6526600	Weak transcription	HSMM	muscle
35	chr9:6509000-6519200	Weak transcription	Fetal Intestine Large	intestine
36	chr9:6509000-6520200	Weak transcription	Liver	Liver
37	chr9:6509000-6521600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:6509000-6521800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:6509000-6521800	Weak transcription	Adipose Nuclei	Adipose
40	chr9:6509400-6521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:6509800-6525000	Weak transcription	Osteobl	bone
42	chr9:6509800-6530200	Weak transcription	A549	lung
43	chr9:6510000-6521800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:6510000-6521800	Weak transcription	Fetal Brain Female	brain
45	chr9:6510400-6558800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:6510600-6522200	Weak transcription	NHDF-Ad	bronchial
47	chr9:6510600-6525000	Weak transcription	NH-A	brain
48	chr9:6510600-6543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:6510800-6521200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:6511000-6518600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links