Variant report

Variant	rs560960658
Chromosome Location	chr4:119522878-119522879
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1002771	chr4:119125361-119571237	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv980251	chr4:119510579-119563981	Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv967843	chr4:119521168-119524494	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv1824927	chr4:119521936-119577466	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119513400-119527800	Weak transcription	Brain Substantia Nigra	brain
2	chr4:119513400-119528200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:119513400-119528400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:119513400-119534800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:119513400-119551400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:119513400-119554000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:119513400-119554800	Weak transcription	Ovary	ovary
8	chr4:119513400-119557200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:119513600-119524000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:119513600-119526400	Weak transcription	Left Ventricle	heart
11	chr4:119513600-119526600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:119513600-119526600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:119513600-119526600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:119513600-119526800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:119513600-119527000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:119513600-119527200	Weak transcription	Brain Germinal Matrix	brain
17	chr4:119513600-119528000	Weak transcription	HSMMtube	muscle
18	chr4:119513600-119529000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:119513600-119530600	Weak transcription	Primary T cells from cord blood	blood
20	chr4:119513600-119536800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:119513600-119539200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:119513600-119549200	Weak transcription	Esophagus	oesophagus
23	chr4:119513600-119550400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:119513600-119551000	Weak transcription	Pancreas	Pancrea
25	chr4:119513600-119551600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:119513600-119552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:119513600-119552400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:119513600-119552400	Weak transcription	Fetal Brain Female	brain
29	chr4:119513600-119552400	Weak transcription	Lung	lung
30	chr4:119513600-119552400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr4:119513600-119554000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:119513600-119555800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:119513600-119559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:119513800-119526600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:119513800-119526800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr4:119513800-119527400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:119513800-119551200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:119513800-119552400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:119513800-119555000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:119513800-119556000	Weak transcription	Fetal Lung	lung
41	chr4:119517400-119526200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:119518000-119523000	Strong transcription	Fetal Stomach	stomach
43	chr4:119518200-119523600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:119518400-119552600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:119518800-119557000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:119519000-119526400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:119519000-119526600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:119519000-119549600	Weak transcription	Brain Anterior Caudate	brain
49	chr4:119519400-119552400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:119519600-119526400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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