Variant report

Variant	rs560966077
Chromosome Location	chr14:78120433-78120434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:78120363-78120700	NB4	blood:	n/a	chr14:78120519-78120529 chr14:78120515-78120530 chr14:78120517-78120527 chr14:78120519-78120528 chr14:78120520-78120527 chr14:78120518-78120529
2	CTCF	chr14:78120320-78120470	GM12872	blood:	n/a	n/a
3	ZNF263	chr14:78119849-78120626	HEK293-T-REx	kidney:	n/a	n/a
4	CTCF	chr14:78120320-78120470	GM12864	blood:	n/a	n/a
5	REST	chr14:78120095-78121098	H1-neurons	neurons:	n/a	n/a
6	STAT3	chr14:78120392-78120576	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78081876..78084095-chr14:78119324..78121053,2	MCF-7	breast:
2	chr14:78116603..78122891-chr14:78172785..78176058,7	MCF-7	breast:

Variant related genes	Relation type
COX6CP11	TF binding region
ENSG00000119705	Chromatin interaction
ENSG00000100601	Chromatin interaction
ENSG00000100596	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv9155	chr14:78118162-78133830	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv32836	chr14:78119497-78124958	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv869872	chr14:78119527-78161340	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78115600-78120800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:78119600-78122000	Enhancers	Pancreas	Pancrea
3	chr14:78119600-78123200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:78119800-78120800	Enhancers	Placenta	Placenta
5	chr14:78119800-78121200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:78119800-78121400	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:78119800-78121400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:78119800-78121400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:78119800-78121800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:78119800-78122000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:78119800-78122000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:78119800-78125400	Enhancers	Adipose Nuclei	Adipose
13	chr14:78120000-78120800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr14:78120000-78121400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:78120000-78121800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:78120000-78121800	Enhancers	Primary B cells from cord blood	blood
17	chr14:78120000-78121800	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:78120000-78122000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr14:78120000-78122000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:78120000-78122000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr14:78120000-78122000	Enhancers	Fetal Intestine Large	intestine
22	chr14:78120000-78122200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr14:78120200-78120600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:78120200-78120600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr14:78120200-78120600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:78120200-78120600	Enhancers	Fetal Thymus	thymus
27	chr14:78120200-78120600	Active TSS	HepG2	liver
28	chr14:78120200-78120800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:78120200-78120800	Enhancers	Fetal Muscle Leg	muscle
30	chr14:78120200-78120800	Weak transcription	K562	blood
31	chr14:78120200-78121200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:78120200-78121400	Enhancers	Brain Hippocampus Middle	brain
33	chr14:78120200-78121800	Enhancers	Brain Anterior Caudate	brain
34	chr14:78120200-78121800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr14:78120200-78122000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr14:78120200-78122000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr14:78120200-78127600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:78120400-78120600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:78120400-78121000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:78120400-78121000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:78120400-78121000	Enhancers	Fetal Muscle Trunk	muscle
42	chr14:78120400-78121400	Enhancers	Fetal Brain Male	brain
43	chr14:78120400-78121600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr14:78120400-78121800	Enhancers	Gastric	stomach
45	chr14:78120400-78122000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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