Variant report

Variant	rs560972480
Chromosome Location	chr7:11791753-11791754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr7:11791403-11792120	A549	lung:	n/a	n/a
2	FOSL2	chr7:11790835-11791966	A549	lung:	n/a	chr7:11791126-11791134
3	EP300	chr7:11790865-11792180	A549	lung:	n/a	chr7:11791071-11791085
4	NR3C1	chr7:11791532-11792077	A549	lung:	n/a	n/a
5	NR3C1	chr7:11791436-11792077	A549	lung:	n/a	n/a
6	TCF7L2	chr7:11791026-11792212	PANC-1	pancreas:	n/a	n/a
7	GATA3	chr7:11790758-11792156	A549	lung:	n/a	n/a
8	MAX	chr7:11790782-11792116	A549	lung:	n/a	chr7:11791320-11791329
9	GATA3	chr7:11791540-11792063	MCF-7	breast:	n/a	n/a
10	NR3C1	chr7:11791520-11791986	A549	lung:	n/a	n/a
11	TCF12	chr7:11791375-11791958	A549	lung:	n/a	chr7:11791736-11791743
12	NR3C1	chr7:11790859-11792173	A549	lung:	n/a	chr7:11791125-11791134 chr7:11791126-11791135
13	JUND	chr7:11791459-11792011	A549	lung:	n/a	n/a
14	POLR2A	chr7:11791387-11792058	PANC-1	pancreas:	n/a	n/a
15	TEAD4	chr7:11791499-11792002	A549	lung:	n/a	n/a
16	FOXA1	chr7:11791555-11791984	T-47D	breast:	n/a	n/a
17	NR3C1	chr7:11791481-11792051	A549	lung:	n/a	n/a
18	GATA3	chr7:11790958-11792108	A549	lung:	n/a	n/a
19	FOXA2	chr7:11791223-11792188	A549	lung:	n/a	n/a
20	SP1	chr7:11790901-11792119	A549	lung:	n/a	chr7:11791034-11791046 chr7:11791034-11791046
21	REST	chr7:11790973-11792042	A549	lung:	n/a	n/a
22	GATA3	chr7:11791565-11791961	T-47D	breast:	n/a	n/a
23	SP1	chr7:11790800-11792218	A549	lung:	n/a	chr7:11791034-11791046 chr7:11791034-11791046
24	USF1	chr7:11791538-11791944	A549	lung:	n/a	n/a
25	EP300	chr7:11790460-11792207	A549	lung:	n/a	chr7:11791071-11791085
26	BCL3	chr7:11790859-11792070	A549	lung:	n/a	n/a
27	NR2F2	chr7:11791525-11791935	MCF-7	breast:	n/a	n/a
28	TCF12	chr7:11790726-11792272	A549	lung:	n/a	chr7:11791736-11791743
29	NR3C1	chr7:11791503-11792026	A549	lung:	n/a	n/a
30	BCL3	chr7:11791136-11792059	A549	lung:	n/a	n/a
31	NR2F2	chr7:11791569-11792034	MCF-7	breast:	n/a	n/a
32	CREB1	chr7:11791682-11791955	A549	lung:	n/a	n/a
33	POLR2A	chr7:11791437-11792012	PANC-1	pancreas:	n/a	n/a
34	NR3C1	chr7:11791632-11791962	A549	lung:	n/a	n/a
35	FOXA1	chr7:11791597-11791897	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
THSD7A	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887612	chr7:11756776-11806289	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887613	chr7:11766964-11806289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv970796	chr7:11787992-11794418	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv525415	chr7:11791621-11795598	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11783000-11793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:11790400-11791800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:11790600-11792600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:11791600-11791800	Active TSS	A549	lung
5	chr7:11791600-11792000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:11791600-11792200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:11791600-11795000	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links