Variant report

Variant	rs56097252
Chromosome Location	chr5:29257225-29257226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10044024	0.82[ASN][1000 genomes]
rs10050443	0.82[ASN][1000 genomes]
rs10054250	0.81[ASN][1000 genomes]
rs10062606	0.81[ASN][1000 genomes]
rs10069328	0.81[ASN][1000 genomes]
rs10069894	0.81[ASN][1000 genomes]
rs10073570	0.81[ASN][1000 genomes]
rs10454837	0.82[ASN][1000 genomes]
rs10454851	0.82[ASN][1000 genomes]
rs10940787	0.82[ASN][1000 genomes]
rs10940788	0.82[ASN][1000 genomes]
rs10940790	0.82[ASN][1000 genomes]
rs11959636	0.82[ASN][1000 genomes]
rs4317332	0.82[ASN][1000 genomes]
rs4331913	0.82[ASN][1000 genomes]
rs4346778	0.82[ASN][1000 genomes]
rs4351155	0.82[ASN][1000 genomes]
rs4370287	0.81[ASN][1000 genomes]
rs4467718	0.81[ASN][1000 genomes]
rs4476737	0.81[ASN][1000 genomes]
rs4577702	0.81[ASN][1000 genomes]
rs4593279	0.84[ASN][1000 genomes]
rs4620035	0.81[ASN][1000 genomes]
rs4632810	0.82[ASN][1000 genomes]
rs5023619	0.81[ASN][1000 genomes]
rs55891773	0.82[ASN][1000 genomes]
rs55893778	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56104054	0.82[ASN][1000 genomes]
rs56171187	0.82[ASN][1000 genomes]
rs56252458	0.82[ASN][1000 genomes]
rs56359525	0.82[ASN][1000 genomes]
rs56403354	0.82[ASN][1000 genomes]
rs59639762	0.82[ASN][1000 genomes]
rs6450678	0.82[ASN][1000 genomes]
rs6450679	0.82[ASN][1000 genomes]
rs6450680	0.82[ASN][1000 genomes]
rs6862626	0.82[ASN][1000 genomes]
rs6881646	0.82[ASN][1000 genomes]
rs72743470	0.82[ASN][1000 genomes]
rs72743471	0.82[ASN][1000 genomes]
rs72743472	0.82[ASN][1000 genomes]
rs72743476	0.82[ASN][1000 genomes]
rs72743478	0.82[ASN][1000 genomes]
rs7701380	0.82[ASN][1000 genomes]
rs7717789	0.82[ASN][1000 genomes]
rs7732794	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv881552	chr5:29219030-29466930	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1024756	chr5:29220387-29501672	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv880722	chr5:29249544-29466930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv980625	chr5:29252358-29257987	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv968157	chr5:29252358-29348040	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv462083	chr5:29254574-29327911	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv597752	chr5:29254574-29327911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29255000-29258600	Weak transcription	Hela-S3	cervix

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