Variant report

Variant	rs56097784
Chromosome Location	chr14:21818827-21818828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21727359..21730774-chr14:21816654..21820383,4	K562	blood:
2	chr14:21812370..21815159-chr14:21817089..21819526,2	MCF-7	breast:
3	chr14:21817179..21819703-chr14:21826063..21828409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092201	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11845999	1.00[AMR][1000 genomes]
rs11846277	1.00[AMR][1000 genomes]
rs11846401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11852123	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105113	0.89[AFR][1000 genomes]
rs34725281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55884255	1.00[AMR][1000 genomes]
rs56074436	1.00[AMR][1000 genomes]
rs56108731	1.00[AMR][1000 genomes]
rs56117003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56229026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58334761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59176394	1.00[AMR][1000 genomes]
rs60690486	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579616	1.00[AMR][1000 genomes]
rs73579641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579666	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579678	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579686	0.81[AFR][1000 genomes]
rs73579690	0.81[AFR][1000 genomes]
rs74034925	1.00[AMR][1000 genomes]
rs74034927	1.00[AMR][1000 genomes]
rs74034929	1.00[AMR][1000 genomes]
rs74034930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1048032	chr14:21602341-21847247	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv541978	chr14:21602341-21847247	Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv1044822	chr14:21659344-21860081	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	esv1825348	chr14:21691941-21829404	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
17	nsv428617	chr14:21721165-21871164	Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
19	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21803600-21820200	Weak transcription	K562	blood
2	chr14:21809200-21819800	Weak transcription	Fetal Intestine Small	intestine
3	chr14:21809800-21819200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:21811200-21819200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:21811400-21819000	Weak transcription	Primary T cells from cord blood	blood
6	chr14:21811400-21819000	Weak transcription	Dnd41	blood
7	chr14:21811400-21819200	Weak transcription	Osteobl	bone
8	chr14:21811600-21819000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:21811600-21819000	Weak transcription	HepG2	liver
10	chr14:21811600-21820000	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:21811800-21820200	Weak transcription	Gastric	stomach
12	chr14:21812000-21819000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:21815000-21819200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:21815000-21819800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:21815400-21819200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:21815600-21819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:21815600-21819000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:21815600-21819000	Weak transcription	NHDF-Ad	bronchial
19	chr14:21815600-21819200	Weak transcription	NHLF	lung
20	chr14:21815600-21820200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:21815800-21819000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:21816000-21819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:21816400-21820800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:21816600-21819000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:21816600-21819000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:21816600-21819200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:21816600-21819200	Weak transcription	HUVEC	blood vessel
28	chr14:21816800-21819000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:21816800-21819200	Weak transcription	Adipose Nuclei	Adipose
30	chr14:21817000-21819000	Weak transcription	NH-A	brain
31	chr14:21817000-21820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:21817000-21820200	Weak transcription	Pancreas	Pancrea
33	chr14:21817200-21819000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:21817200-21819000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:21817200-21819000	Weak transcription	Placenta	Placenta
36	chr14:21817200-21819000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:21817200-21819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:21817400-21819000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:21817400-21819000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:21817400-21819000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr14:21817400-21819000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr14:21817400-21819000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:21817400-21819000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:21817400-21819000	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:21817400-21819000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:21817400-21819000	Weak transcription	Fetal Lung	lung
47	chr14:21817400-21819200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:21817400-21820000	Weak transcription	Fetal Kidney	kidney
49	chr14:21817600-21819200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:21817600-21819200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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