Variant report

Variant	rs560984240
Chromosome Location	chr9:14278328-14278329
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020298	chr9:14277253-14294980	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271000-14279000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:14271200-14278400	Weak transcription	Lung	lung
3	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:14272000-14281400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:14272200-14296800	Weak transcription	Hela-S3	cervix
6	chr9:14273400-14281600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:14273600-14285400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:14274000-14278400	Enhancers	A549	lung
9	chr9:14274000-14280000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:14274000-14282800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:14274400-14278800	Enhancers	Colon Smooth Muscle	Colon
12	chr9:14274400-14282600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:14274600-14280000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:14274600-14282800	Enhancers	NH-A	brain
15	chr9:14274800-14278400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:14274800-14278600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:14274800-14278600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:14275000-14278800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:14275000-14282800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:14275200-14278800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:14275200-14279800	Enhancers	HUVEC	blood vessel
22	chr9:14275200-14280600	Enhancers	Fetal Heart	heart
23	chr9:14275600-14282600	Weak transcription	Gastric	stomach
24	chr9:14277000-14279000	Flanking Active TSS	NHEK	skin
25	chr9:14277200-14278600	Enhancers	Brain Angular Gyrus	brain
26	chr9:14277200-14278800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:14277200-14278800	Enhancers	Fetal Stomach	stomach
28	chr9:14277200-14278800	Enhancers	Right Atrium	heart
29	chr9:14277200-14278800	Enhancers	Right Ventricle	heart
30	chr9:14277200-14279000	Enhancers	HepG2	liver
31	chr9:14277200-14279200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:14277200-14279200	Enhancers	Aorta	Aorta
33	chr9:14277200-14279200	Enhancers	Liver	Liver
34	chr9:14277200-14279200	Enhancers	Brain Substantia Nigra	brain
35	chr9:14277200-14279200	Enhancers	Left Ventricle	heart
36	chr9:14277200-14279200	Enhancers	Psoas Muscle	Psoas
37	chr9:14277200-14279800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr9:14277200-14280000	Enhancers	Fetal Lung	lung
39	chr9:14277200-14281800	Enhancers	Fetal Brain Female	brain
40	chr9:14277200-14282000	Enhancers	Brain Germinal Matrix	brain
41	chr9:14277400-14278600	Enhancers	Pancreas	Pancrea
42	chr9:14277400-14278800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr9:14277400-14279600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:14277600-14278600	Enhancers	Stomach Smooth Muscle	stomach
45	chr9:14277600-14278800	Enhancers	HSMMtube	muscle
46	chr9:14277600-14279000	Enhancers	Adipose Nuclei	Adipose
47	chr9:14277600-14279200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr9:14277600-14279200	Genic enhancers	Fetal Muscle Leg	muscle
49	chr9:14277600-14279400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:14277600-14280000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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