Variant report
| Variant | rs56102526 |
|---|---|
| Chromosome Location | chr7:129429347-129429348 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:129405587..129407714-chr7:129429334..129431431,2 | MCF-7 | breast: | |
| 2 | chr7:129244640..129247034-chr7:129428547..129431253,2 | K562 | blood: | |
| 3 | chr7:129427078..129429949-chr7:129430780..129433313,3 | K562 | blood: | |
| 4 | chr7:129428984..129431159-chr7:129436121..129437980,2 | MCF-7 | breast: | |
| 5 | chr7:129425011..129426914-chr7:129428046..129430047,2 | MCF-7 | breast: | |
| 6 | chr7:129428492..129430168-chr7:129448799..129450329,2 | MCF-7 | breast: | |
| 7 | chr7:129417027..129423271-chr7:129428076..129437839,16 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000242078 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12530580 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2693727 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2693737 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55817702 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55846850 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55951852 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55955026 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55995041 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56069073 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56122969 | 0.83[AMR][1000 genomes] |
| rs56225229 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56322631 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56368013 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56390630 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73487527 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs868055 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv14232 | chr7:129379923-129445465 | Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 2 | nsv516024 | chr7:129387380-129444951 | Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 3 | nsv464721 | chr7:129397644-129444951 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 4 | nsv608420 | chr7:129397644-129444951 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 5 | esv1828133 | chr7:129403541-129437113 | Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 6 | esv1843969 | chr7:129403541-129446598 | Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 7 | esv1802311 | chr7:129406936-129442389 | Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 365 gene(s) | inside rSNPs | diseases |
| 8 | esv3382736 | chr7:129429335-129429497 | Weak transcription Bivalent Enhancer Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:129425400-129433600 | Weak transcription | K562 | blood |
| 2 | chr7:129429200-129429400 | Bivalent Enhancer | Fetal Stomach | stomach |
| 3 | chr7:129429200-129431000 | Bivalent Enhancer | Foreskin Fibroblast Primary Cells skin01 | Skin |
