Variant report

Variant	rs561025978
Chromosome Location	chr20:52867211-52867212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	esv3454356	chr20:52866111-52867456	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3418146	chr20:52866140-52867424	Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3505594	chr20:52866166-52867379	Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3454357	chr20:52866174-52867401	Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3505593	chr20:52866181-52867454	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3505597	chr20:52866184-52867397	Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3505595	chr20:52866197-52867395	Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3454358	chr20:52866238-52867358	Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3505598	chr20:52866238-52867358	Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52865400-52871000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:52867200-52867600	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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