The 2.0 version of rSNPBase
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Variant report
Variant
rs561040441
Chromosome Location
chr5:35598727-35598728
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:35227884..35229757-chr5:35598684..35600438,2
MCF-7
breast:
2
chr5:35229016..35230896-chr5:35598713..35599735,8
MCF-7
breast:
3
chr5:35595236..35597219-chr5:35597917..35600300,2
MCF-7
breast:
4
chr5:35228021..35230046-chr5:35597822..35599933,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000113494
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv525477
chr5:35530905-35792990
Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNA
3 gene(s)
inside rSNPs
diseases
2
nsv525994
chr5:35577257-35600210
Flanking Active TSS Enhancers ZNF genes & repeats
Chromatin interactive region
2 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links