Variant report

Variant	rs561041287
Chromosome Location	chr15:49752745-49752746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49747400-49753000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49749200-49753600	Weak transcription	Fetal Lung	lung
3	chr15:49750000-49753400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr15:49750200-49752800	Enhancers	Rectal Smooth Muscle	rectum
5	chr15:49750200-49752800	Enhancers	NHLF	lung
6	chr15:49750400-49754200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:49750600-49754600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:49750800-49753400	Weak transcription	Hela-S3	cervix
9	chr15:49751200-49753200	Enhancers	Ovary	ovary
10	chr15:49751400-49752800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:49751400-49753200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:49751600-49753600	Weak transcription	HSMMtube	muscle
13	chr15:49752000-49753200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:49752200-49753000	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:49752400-49754000	Weak transcription	Psoas Muscle	Psoas
16	chr15:49752400-49755000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:49752400-49764000	Weak transcription	HSMM	muscle
18	chr15:49752600-49753400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:49752600-49753600	Weak transcription	Adipose Nuclei	Adipose
20	chr15:49752600-49753800	Genic enhancers	Osteobl	bone
21	chr15:49752600-49755400	Enhancers	Fetal Heart	heart
22	chr15:49752600-49755800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:49752600-49758200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links