Variant report

Variant	rs561043663
Chromosome Location	chr2:110290414-110290415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874777	chr2:109825516-110693317	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874780	chr2:110078080-110432886	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv2874	chr2:110289373-110333621	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:110274000-110292800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:110280600-110290600	Weak transcription	Fetal Kidney	kidney
3	chr2:110281000-110292800	Weak transcription	Spleen	Spleen
4	chr2:110285000-110299200	Weak transcription	Aorta	Aorta
5	chr2:110287200-110293200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:110288000-110292600	Weak transcription	Right Ventricle	heart
7	chr2:110288000-110293200	Weak transcription	Ovary	ovary
8	chr2:110288000-110299000	Weak transcription	Esophagus	oesophagus
9	chr2:110288600-110293000	Weak transcription	Gastric	stomach
10	chr2:110288800-110292600	Weak transcription	Right Atrium	heart
11	chr2:110288800-110292800	Weak transcription	Placenta	Placenta
12	chr2:110288800-110293000	Weak transcription	Lung	lung
13	chr2:110289200-110292400	Weak transcription	Fetal Heart	heart
14	chr2:110290200-110291000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:110290400-110291400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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