Variant report

Variant	rs561043706
Chromosome Location	chr1:209393686-209393687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209389552..209391283-chr1:209392821..209394961,2	MCF-7	breast:
2	chr1:209388184..209391480-chr1:209391851..209395269,3	MCF-7	breast:
3	chr1:209393308..209395102-chr1:209556912..209559448,2	MCF-7	breast:
4	chr1:209383099..209385008-chr1:209391993..209394631,2	MCF-7	breast:
5	chr1:209393306..209397796-chr1:209399926..209403415,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3431530	chr1:209393554-209395752	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209391400-209394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:209392000-209394200	Enhancers	HMEC	breast
3	chr1:209392200-209394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:209392200-209394400	Enhancers	Fetal Brain Male	brain
5	chr1:209392800-209393800	Enhancers	Esophagus	oesophagus
6	chr1:209392800-209394200	Enhancers	Fetal Thymus	thymus
7	chr1:209392800-209394400	Flanking Active TSS	Dnd41	blood
8	chr1:209393200-209393800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr1:209393200-209393800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:209393200-209393800	Enhancers	Fetal Muscle Leg	muscle
11	chr1:209393200-209394000	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:209393200-209394000	Active TSS	Brain Anterior Caudate	brain
13	chr1:209393200-209394000	Active TSS	Brain Hippocampus Middle	brain
14	chr1:209393200-209394000	Active TSS	Brain Substantia Nigra	brain
15	chr1:209393200-209394200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:209393200-209394200	Enhancers	Fetal Stomach	stomach
17	chr1:209393200-209394200	Enhancers	Thymus	Thymus
18	chr1:209393400-209393800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:209393400-209393800	Active TSS	Brain Angular Gyrus	brain
20	chr1:209393400-209393800	Enhancers	Fetal Brain Female	brain
21	chr1:209393400-209393800	Active TSS	Fetal Lung	lung
22	chr1:209393400-209393800	Flanking Active TSS	HSMMtube	muscle
23	chr1:209393400-209393800	Flanking Active TSS	NHEK	skin
24	chr1:209393400-209394000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:209393400-209394000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:209393400-209394000	Active TSS	Brain Cingulate Gyrus	brain
27	chr1:209393400-209394000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr1:209393400-209394000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:209393400-209394000	Enhancers	Placenta	Placenta
30	chr1:209393400-209394000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
31	chr1:209393400-209394000	Active TSS	Stomach Smooth Muscle	stomach
32	chr1:209393600-209393800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr1:209393600-209393800	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr1:209393600-209393800	Active TSS	Fetal Muscle Trunk	muscle
35	chr1:209393600-209393800	Bivalent Enhancer	Lung	lung
36	chr1:209393600-209393800	Flanking Active TSS	Small Intestine	intestine
37	chr1:209393600-209393800	Flanking Active TSS	Osteobl	bone
38	chr1:209393600-209394000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr1:209393600-209394000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr1:209393600-209394000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr1:209393600-209394000	Flanking Active TSS	HSMM	muscle
42	chr1:209393600-209394400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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