Variant report

Variant	rs56105237
Chromosome Location	chr5:106440173-106440174
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17159478	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6866620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884722	0.89[AFR][1000 genomes]
rs73780255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780258	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7703119	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714028	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599332	chr5:106403516-106502006	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106435000-106440200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:106435000-106440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:106435000-106440200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106435000-106440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:106435400-106440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:106436600-106440200	Weak transcription	A549	lung
7	chr5:106439200-106444000	Weak transcription	Aorta	Aorta
8	chr5:106440000-106440200	Enhancers	Psoas Muscle	Psoas
9	chr5:106440000-106440400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:106440000-106440400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106440000-106440600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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