Variant report

Variant	rs561085222
Chromosome Location	chr6:143058501-143058502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv981317	chr6:143058282-143069615	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143049800-143073200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143050000-143061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:143050600-143058600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:143050800-143058600	Weak transcription	NHDF-Ad	bronchial
5	chr6:143054200-143072800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:143056800-143059000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:143057000-143059000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143057000-143059000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:143057200-143058800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:143057400-143058600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:143057400-143058800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:143057400-143058800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:143057400-143058800	Weak transcription	Esophagus	oesophagus
14	chr6:143058200-143059400	Enhancers	NHEK	skin
15	chr6:143058400-143059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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